###################################################################### # XTOOL/SCORE # ###################################################################### ### FUNCTION SCORE ### ### set up input and output files ------------------------------------ ### # RECEPTOR_PDB_FILE ./1ppc_protein.pdb REFERENCE_MOL2_FILE ./1ppc_ligand.mol2 #COFACTOR_MOL2_FILE none LIGAND_MOL2_FILE ./conformers.mol2 # OUTPUT_TABLE_FILE ./xscore.table OUTPUT_LOG_FILE ./xscore.log ### ### how many top hits to extract from the LIGAND_MOL2_FILE? ### NUMBER_OF_HITS 5 HITS_DIRECTORY ./hits.mdb ### ### want to include atomic binding scores in the resulting Mol2 files? ### SHOW_ATOM_BIND_SCORE YES [YES/NO] ### ### set up scoring functions ----------------------------------------- ### APPLY_HPSCORE YES [YES/NO] HPSCORE_CVDW 0.004 HPSCORE_CHB 0.053 HPSCORE_CHP 0.011 HPSCORE_CRT -0.061 HPSCORE_C0 3.448 APPLY_HMSCORE YES [YES/NO] HMSCORE_CVDW 0.004 HMSCORE_CHB 0.094 HMSCORE_CHM 0.394 HMSCORE_CRT -0.099 HMSCORE_C0 3.585 APPLY_HSSCORE YES [YES/NO] HSSCORE_CVDW 0.004 HSSCORE_CHB 0.069 HSSCORE_CHS 0.004 HSSCORE_CRT -0.092 HSSCORE_C0 3.349 ### ### set up chemical rules for pre-screening ligand molecules --------- ### APPLY_CHEMICAL_RULES NO [YES/NO] MAXIMAL_MOLECULAR_WEIGHT 600.0 MINIMAL_MOLECULAR_WEIGHT 200.0 MAXIMAL_LOGP 6.00 MINIMAL_LOGP 1.00 MAXIMAL_HB_ATOM 8 MINIMAL_HB_ATOM 2 ### ###